PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000909.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 163aa    MW: 17851.3 Da    PI: 10.8416
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000909.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-20858256
                      AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  Itr_sc000909.1_g00009.1  8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAAMAYDGAARSLRGA 58
                             69*******.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-32865IPR001471AP2/ERF domain
PROSITE profilePS5103222.787865IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-22865IPR016177DNA-binding domain
SMARTSM003801.4E-35871IPR001471AP2/ERF domain
PfamPF008473.1E-13857IPR001471AP2/ERF domain
CDDcd000187.79E-30865No hitNo description
PRINTSPR003673.9E-11920IPR001471AP2/ERF domain
PRINTSPR003673.9E-113147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MASTREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEAAMAYDG AARSLRGAKA  60
KTNFPPPPSV AARPGLTLDL NLPTDNPNNH HHRRSWPSPS GRIMIGEFLQ TGVLKEVVPP  120
NVVNAAPPSA SPPSESGGGA ANFFSIVRRG LPIDLNEPPP LWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21865563ATERF1
3gcc_A2e-21865563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096343.18e-72PREDICTED: ethylene-responsive transcription factor 12
SwissprotQ94ID64e-47ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A068TU631e-72A0A068TU63_COFCA; Uncharacterized protein
STRINGVIT_10s0003g00130.t012e-67(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.13e-43ERF domain protein 12